#!/usr/bin/env python import argparse import errno import os import gudhi """ This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria Modification(s): - YYYY/MM Author: Description of the modification """ __author__ = "Vincent Rouvreau" __copyright__ = "Copyright (C) 2016 Inria" __license__ = "MIT" parser = argparse.ArgumentParser( description="RipsComplex creation from " "points read in a OFF file.", epilog="Example: " "example/rips_complex_diagram_persistence_from_off_file_example.py " "-f ../data/points/tore3D_300.off -a 0.6" "- Constructs a Rips complex with the " "points from the given OFF file.", ) parser.add_argument("-f", "--file", type=str, required=True) parser.add_argument("-e", "--max_edge_length", type=float, default=0.5) parser.add_argument("-d", "--max_dimension", type=int, default=1) parser.add_argument("-b", "--band", type=float, default=0.0) parser.add_argument( "--no-diagram", default=False, action="store_true", help="Flag for not to display the diagrams", ) args = parser.parse_args() with open(args.file) as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): print("##############################################################") print("RipsComplex creation from points read in a OFF file") message = "RipsComplex with max_edge_length=" + \ repr(args.max_edge_length) print(message) point_cloud = gudhi.read_points_from_off_file(off_file=args.file) rips_complex = gudhi.RipsComplex( points=point_cloud, max_edge_length=args.max_edge_length ) simplex_tree = rips_complex.create_simplex_tree( max_dimension=args.max_dimension ) message = "Number of simplices=" + repr(simplex_tree.num_simplices()) print(message) diag = simplex_tree.persistence() print("betti_numbers()=") print(simplex_tree.betti_numbers()) if args.no_diagram == False: import matplotlib.pyplot as plot gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), args.file) f.close()